Cellhashr
WebCell hashing is a method that allows sample multiplexing or super-loading within single-cell RNA-seq platforms, such as 10x genomics, originally developed at New York Genome … http://www.cellchat.org/
Cellhashr
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WebFeb 19, 2024 · In BimberLab/cellhashR: A Package for Demultiplexing Cell Hashing Data. View source: R/CellHashing.R. CallAndGenerateReport: R Documentation: Call Cell Hashing And Generate Report Description. Runs the default processing pipeline Usage WebFeb 19, 2024 · BimberLab/cellhashR documentation built on Feb. 19, 2024, 10:06 a.m. Related to SummarizeCellsByClassification in BimberLab/cellhashR ... BimberLab/cellhashR index
WebMar 31, 2024 · This is the cellhashR version used in Boggy et al. This is the cellhashR version used in Boggy et al. Toggle navigation. Upload; Communities; Log in Sign up. There is a newer version of this record available. March 31, 2024 Software Open Access BimberLab/cellhashR: Version 1.0.3. WebFeb 19, 2024 · BimberLab/cellhashR / GetSeed: Get random seed GetSeed: Get random seed In BimberLab/cellhashR: A Package for Demultiplexing Cell Hashing Data. View source: R/Utils.R. GetSeed: R Documentation: Get random seed Description. Sets a random seed, which should be used in all internal functions Usage ...
WebGenerate Cell Hashing Calls. The primary methods to generating cell hashing calls from a filtered matrix of count data. GenerateCellHashingCalls( barcodeMatrix, methods = c ("bff_cluster", "gmm_demux", "dropletutils"), methodsForConsensus = NULL, cellbarcodeWhitelist = NULL, metricsFile = NULL, doTSNE = TRUE, doHeatmap = … WebNov 29, 2024 · Zika virus (ZIKV) is an arthropod-borne Flavivirus that can also be transmitted vertically from infected mother to fetus. Infection of the fetus during pregnancy can lead to congenital malformations and severely impact fetal brain development causing a myriad of diseases now labeled Congenital Zika Syndrome (CZS). The mechanisms by …
WebSep 19, 2024 · 1. cellhashR Bimodal Flexible Fitting (BFF) algorithm in cellhashR is based on a single assumption: a sample barcode count distribution is bimodal. Two algorithms …
WebDive into the research topics where Benjamin Bimber is active. These topic labels come from the works of this person. Together they form a unique fingerprint. spectrum gas productsWebWe integrated these and other algorithms into cellhashR, a new R package that provides integrated QC and a single command to execute and compare multiple demultiplexing algorithms. We demonstrate that BFFcluster demultiplexing is both tunable and insensitive to issues with poorly-behaved data that can confound other algorithms. Using two well ... spectrum gas anaheimWebData is loaded for analysis from the umi_count directory of 10X Genomics data using the cellhashR command ProcessCountMatrix. This function loads raw counts and performs basic filtering and QC. The input count … spectrum garneyWebToggle navigation cellhashR 1.0.3. Reference; Articles Data/Normalization QC; Demultiplexing with Bimodal Flexible Fitting (BFF) Benchmarking Demultiplexing Algorithms with cellhashR; Set random seed Source: R/Utils.R. SetSeed.Rd. Sets the seed used for R‘s random number generator, which should be used in all internal functions. spectrum gaming wifiWebWe integrated these and other algorithms into cellhashR, a new R package that provides integrated QC and a single command to execute and compare multiple demultiplexing … spectrum gas products anaheim caWebJan 4, 2024 · Hello, I have an R package that is using pkgdown to general HTML docs, and I'm using github actions to push this to gh-pages. This was very easy and quite nice. My R package generates HTML reports from sequence data. I have one example report checked into the github repo as a static file. It takes a lot of data to make a useful example, so I … spectrum gas systems limitedWebcellhashR. An R package designed to demultiplex cell hashing data. Please see our documentation for more detail. Table of Contents. Overview; Example Usage; … spectrum garlic and chili sesame oil